DNA Damage Atlas


GSM1536403-SCC_Acla_Low_spike-in_20140617_6




Basic Information

Manual

Sample ID:   

SRR1638880, SRR1638881


Source Project ID:   

GSE62927

Cell Type:   

squamous cell carcinoma


Organism:   

Mus musculus


Treatment:   

Aclarubicin


Treatment Dose:   

0.4mM


Genotype:   

WT


Spike-in percentage:   

yeast spike-in: nuclei, wild-type strain W303


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

BLESS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.859375



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA18422237502147742.5188+
chr613709852713709915813709866438.4403+
rDNA196530637.9205-
chrUn_GL45638910069110481068028.3991-
chr855519145555193485551934728.1809-
rDNA41650436014316127.504-
rDNA56339457699118.0268-
chr319943317199435171994331717.7342+
rDNA24168268162633916.4838-
chrUn_JH58430410335910374310356316.0895-
Download the Full Peak List



Motif Analysis

Manual





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