DNA Damage Atlas


GSM1536404-SCC_Etop_Low_spike-in_20140617_4




Basic Information

Manual

Sample ID:   

SRR1638882, SRR1638883


Source Project ID:   

GSE62927

Cell Type:   

squamous cell carcinoma


Organism:   

Mus musculus


Treatment:   

Etoposide


Treatment Dose:   

3.0mM


Genotype:   

WT


Spike-in percentage:   

yeast spike-in: nuclei, wild-type strain W303


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

BLESS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.44403



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr175847430758478487584754989.6493+
chr1423896345238967002389661089.0079-
rDNA096530688.3542-
rDNA41495437214316186.6943-
rDNA18398235432147770.0684+
chr613709848813709915513709866466.7529+
chrUn_GL45638910247111851068165.4239-
chr493531089353893935341564.3699+
chrUn_JH58430410335910374410356351.2103-
chr1211050753711050799811050778747.0163+
Download the Full Peak List



Motif Analysis

Manual





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