DNA Damage Atlas


GSM1536405-SCC_Etop_High_spike-in_20140617_5




Basic Information

Manual

Sample ID:   

SRR1638884, SRR1638885


Source Project ID:   

GSE62927

Cell Type:   

squamous cell carcinoma


Organism:   

Mus musculus


Treatment:   

Etoposide


Treatment Dose:   

30mM


Genotype:   

WT


Spike-in percentage:   

yeast spike-in: nuclei, wild-type strain W303


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

BLESS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.198718



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA41494439674316182.8173-
chrUn_GL45638910243109821068160.1903-
rDNA18360236562147757.8797+
chr613709853613709921213709866453.2877+
rDNA0251430640.8234-
rDNA49159460699139.9444-
chrUn_JH58430410335610383710356333.2848-
rDNA24158268162633929.037-
chr855519145555193475551934717.9451-
chrX14348288414348327514348304817.1897+
Download the Full Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab