DNA Damage Atlas

GSM1543775-LNCaP_MRE11_ChIP-seq_0min

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR1648884


Source Project ID:   

GSE63202

Cell Type:   

LNCaP


Organism:   

Homo sapiens


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

ChIP-seq (anti-MRE11)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM01095231106.195/
chrM12104532335086.5439/
rDNA57672064723.5058/
chrUn_gl00022610632517922.5398/
chrUn_gl00022012991713010212999622.1081/
chr9_gl000199_random57086573605716021.6184/
rDNA28393286542856620.2636/
chr9_gl000199_random34385345363445919.1471/
rDNA64406587651218.7087/
rDNA13663149161401317.559/
Download the Full Peak List


Visualization

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Motif Analysis

Manual





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