DNA Damage Atlas

GSM1543776-LNCaP_MRE11_ChIP-seq_15min_dht

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR1648885


Source Project ID:   

GSE63202

Cell Type:   

LNCaP


Organism:   

Homo sapiens


Treatment:   

Dihydrotestosterone


Treatment Time:   

15mins


Treatment Dose:   

100nM


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

ChIP-seq (anti-MRE11)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM0108121586.8261/
chrM12244166343476.8276/
chr9_gl000199_random34399345213445922.7211/
chr9_gl000199_random57108573485716420.7898/
chrUn_gl00022611830517819.8633/
chr9_gl000199_random68625687326867716.0619/
chr9_gl000199_random11043411052111047615.9309/
chr9_gl000199_random47341474274738314.8268/
chr1010312457710312471210312464313.1412/
chr17_gl000205_random84575885248523212.9017/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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