DNA Damage Atlas

GSM1657853-bas1_3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR1976214


Source Project ID:   

GSE67910

Organism:   

Saccharomyces cerevisiae


Genotype:   

bas1 null


Harvested Time:   

4 hr in meiosis


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

SPO11-oligo


Others:   

epitope tag: Spo11-Flag


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrIV8350568368358358632637.74+
chrVIII1213381231631221672052.23+
chrX7047517060917053121973.82+
chrIV1979411991911985581900.72+
chrII2159092180162172101557.07-
chrXV2181912195902188551533.09-
chrVII6088786109746101611485.09-
chrII6420006435336428991420.15+
chrVI9465596657958851410.23-
chrXVI7125397138037131421403.13-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrIV8350648368358358633036.09+
chrIV1979491991851985581937.57+
chrVIII1214071231391221671919.79+
chrVII6089386109516101611917.35-
chrVI9465596629958851788.5-
chrII6420996435156428991690.57+
chrX2802162813892809051670.74-
chrXV2182012195432188551649.12-
chrIII5620957346567531516.47-
chrX7047687060127053121423.45+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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