DNA Damage Atlas

GSM1659156-NHF1_CPD_XR-seq_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR1976056,SRR1976057


Source Project ID:   

GSE67941

Cell Type:   

NHF1


Organism:   

Homo sapiens


Treatment:   

UV (254 nm)


Treatment Time:   

20s


Treatment Dose:   

1J/m2/s


Harvested Time:   

1hr


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random93321934549338628.9093/
chr1210908516410908582110908528420.9009/
chr1569707172697075816970736820.1446/
chr741995493419958934199561419.6824/
chr317080718517080753717080728717.685/
chr1775774497577628757753717.3886/
chr217552825817552869617552854916.7207/
chr1166391619663918966639175416.5246/
chr1578300311783005777830039916.5196/
chr2036849036862336855516.5196/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr937617892376180513761796821.8789/
chr1210908516410908582110908528420.9009/
chr1185430013854304388543012420.6786/
chr1569707172697075816970736820.1446/
chr741995499419958934199561419.9821/
chr1288150648815515881529519.0806/
chr724882674248827942488275718.3092/
chr123510591423510619923510603317.988/
chr1956151933561521505615204417.7186/
chr2242196649421968254219674517.685/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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