DNA Damage Atlas

GSM1659157-NHF1_CPD_XR-seq_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR1976058,SRR1976059


Source Project ID:   

GSE67941

Cell Type:   

NHF1


Organism:   

Homo sapiens


Treatment:   

UV (254 nm)


Treatment Time:   

20s


Treatment Dose:   

1J/m2/s


Harvested Time:   

1hr


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

XR-seq


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1775774497577628757753719.7193/
chr2241048021410483704104816119.1041/
chrM1112527618.4932/
chr1185430013854305138543014915.9493/
chr1772199775722002237219989815.1742/
chr349987797499879694998788214.4413/
chr1493006690930074679300706514.3014/
chr2245095067450954594509534514.007/
chr1631076283310766833107639513.7268/
chr1910301995103024351030229813.6674/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr733943820339439753394390921.0858/
chr1775774497577628757753719.7193/
chr2241048021410483704104816119.1041/
chr222347858922347875122347863818.5607/
chr740865926408663194086607918.2958/
chr1185430013854304388543014918.1486/
chr455452395554527015545257917.9436/
chr514190292141908521419058317.7422/
chr115913135415913150215913145317.6665/
chr293966569396813939676917.4864/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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