DNA Damage Atlas

GSM1659160-XP-C_CPD_XR-seq_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR1976064


Source Project ID:   

GSE67941

Cell Type:   

GM15983


Organism:   

Homo sapiens


Treatment:   

UV (254 nm)


Treatment Time:   

20s


Treatment Dose:   

1J/m2/s


Genotype:   

XP-C mutant


Harvested Time:   

1hr


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

XR-seq


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr81177635781177692351177676089.95005/
chr19718654297189753971879788.80156/
chr172411454241623324149537.75871/
chr11096171521096197801096186017.42902/
chr145557432055575655555748417.37113/
chr18616967686174978861739357.33488/
chr91161693871161737971161721727.30113/
chr191977197819775527197732047.09822/
chr203032584430329213303270267.01012/
chr175728669257293353572903387.00843/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr811776357811776905211776760810.2395/
chr19718654297189753971879788.80156/
chr172413388241623324149538.0799/
chr101046135551046146331046141208.03303/
chr194002889240031416400300537.85989/
chr19867453198677519986757567.77225/
chr91161693871161735181161721727.73707/
chr51323612381323627261323616337.72423/
chr18616987186174978861739357.59953/
chr51406974551407009581406990727.59595/
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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