DNA Damage Atlas

GSM1659161-XP-C_CPD_XR-seq_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR1976065


Source Project ID:   

GSE67941

Cell Type:   

GM15983


Organism:   

Homo sapiens


Treatment:   

UV (254 nm)


Treatment Time:   

20s


Treatment Dose:   

1J/m2/s


Genotype:   

XP-C mutant


Harvested Time:   

1hr


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr114561010214561144014561094011.9767/
chr2030101911301058063010501610.3297/
chr21358093661358133971358109159.95986/
chr223098484430988388309865659.67542/
chr81177635781177690521177676049.63223/
chr51323612381323627261323616069.49557/
chr194002889240031416400299479.28453/
chr116119522461198363611975279.27696/
chr193886482438867797388660469.18638/
chr101020415051020468931020462338.89053/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr101046135551046146331046141419.75038/
chr81177635781177690521177676049.63223/
chr51323612381323627261323616069.49557/
chr194002889240031416400299479.28453/
chr191977197819775527197745158.83641/
chr19718654297189753971881078.74697/
chr18616987186174978861735638.45186/
chr172413388241623324148538.41866/
chr157516480375166143751653198.35832/
chr172411454241333424122128.15722/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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