DNA Damage Atlas

GSM1659162-XP-C_6-4PP_XR-seq_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR1976066


Source Project ID:   

GSE67941

Cell Type:   

GM15983


Organism:   

Homo sapiens


Treatment:   

UV (254 nm)


Treatment Time:   

20s


Treatment Dose:   

1J/m2/s


Genotype:   

XP-C mutant


Harvested Time:   

1hr


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr142393835723942768239389547.98711/
chr194629377446296635462952747.56689/
chr203340870633414659334128787.07638/
chr51770187751770240951770193606.80383/
chr193910858839113665391106166.74924/
chr194999842250004823500023176.67805/
chr161424061143054814264956.67454/
chr125788934257892790578912166.6386/
chr204441967144426321444205946.58352/
chr171799056017993902179913916.47782/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr194999921450004567500023177.84379/
chr203340870633414237334128787.60382/
chr171799056017993490179913917.34164/
chr161424224143036914264957.0348/
chr172413476241621224151807.03063/
chr193910869339113573391106166.96519/
chr99807718198080392980797846.8924/
chr21286143051286161191286154476.87935/
chr125788934257892658578912166.84049/
chr203453970434544062345423496.83443/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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