DNA Damage Atlas

GSM1659163-XP-C_6-4PP_XR-seq_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR1976067


Source Project ID:   

GSE67941

Cell Type:   

GM15983


Organism:   

Homo sapiens


Treatment:   

UV (254 nm)


Treatment Time:   

20s


Treatment Dose:   

1J/m2/s


Genotype:   

XP-C mutant


Harvested Time:   

1hr


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2048723508487307484872943414.2469/
chr165721774457222087572199569.95155/
chr26718646787336750079.71364/
chr175846752658471826584694629.63658/
chr31493732591493785971493760959.59904/
chr163331482333773433338149.31819/
chr194999921450004567500023059.07273/
chr203453970434544062345423708.84377/
chr203340870633414237334131158.70019/
chr193910869339113573391105458.69669/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr104393154843933787439324879.99978/
chr194999921450004567500023059.07273/
chr203453970434544062345423708.84377/
chr203340870633414237334131158.70019/
chr193910869339113573391105458.69669/
chr125788934257892658578912038.56593/
chr51770187751770240951770193498.56368/
chr172413476241621224151058.42758/
chr107216310972166621721653358.40504/
chr171799056017993490179913808.40182/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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