DNA Damage Atlas

GSM1824920-IgH_I-96k-3prime_rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR2104644


Source Project ID:   

GSE71005

Cell Type:   

Spleen B cell


Organism:   

Mus musculus


Treatment:   

I-SceI retroviral infrection


Genotype:   

IgHI-96k


Targeted break:   

Sg1-2xIsceI


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1211332909711333509811333078556111.3+
chr120674151206743542067415442193.6+
chr1211342458911342969111342693541235.9+
chr178084224780844277808422715822.6+
chr191018880410189005101888047990.03+
chr21636426891636432401636426895829.39+
chr138979789789798098897980975326.69-
chr146477164564771846647718455326.69-
chr33463788734638088346378875326.69+
chr102032675320326955203269535300.32-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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