DNA Damage Atlas

GSM1824938-ΔSγ1_2xI/ΔSµ_2xI-LPS_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR2104662


Source Project ID:   

GSE71005

Cell Type:   

Spleen B cell


Organism:   

Mus musculus


Treatment:   

I-SceI retroviral infrection


Genotype:   

delta-S-gamma-1_2xI/delta-S-mu-2xI


Targeted break:   

Sm-1xIsceI


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1293576832935773429357714649914.2-
chr1210552460610552500410552474240071.5+
chr1211341827711342614711342545437119.8-
chr1273772112737725287377235827647.4-
chr1241514936415153504151511426669.7+
chr1211332022511332741011332723722666.5-
chr1210289279410289320310289296320996.7+
chr1211330706311331113111330863620771-
chr1282273055822734588227329019406.7-
chr1210749419410749488010749470718107-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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