DNA Damage Atlas

GSM1824943-ΔSγ1_2xI_rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR2104667


Source Project ID:   

GSE71005

Cell Type:   

Spleen B cell


Organism:   

Mus musculus


Treatment:   

I-SceI retroviral infrection


Genotype:   

delta-S-gamma-1_2xI


Targeted break:   

Sg1-2xIsceI


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1222353326223540842235373328019.1+
chr1218963527189643091896410217669.8-
chr126962259569623311696230949291.93-
chr121132741471132780021132769808960.97+
chr122432440324325346243250588592.83-
chr121819623418197145181967198052.01-
chr127196307971963776719636117831.98-
chr122297728822977763229775057721.45-
chr121140205701140209561140206237513.04+
chr129124800691248310912482407294.98-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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