DNA Damage Atlas


GSM1824954-ΔSγ1_2xI-H2AX_rep3




Basic Information

Manual

Sample ID:   

SRR2104678


Source Project ID:   

GSE71005

Cell Type:   

Spleen B cell


Organism:   

Mus musculus


Treatment:   

I-SceI retroviral infrection


Genotype:   

delta-S-gamma-1_2xI, H2AX-/-


Targeted break:   

Sg1-2xIsceI


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1211402057211402087811402063212753.9+
chr1211332025811332739911332696511331.2-
chr121178023151178030801178029298332.55-
chr121004587031004597081004593486731.01-
chr121004647241004651701004647665250.26+
chr121137169641137173301137171084265.24+
chr121178083021178088131178085023818.68-
chr121085491871085493891085491893220.04+
chr121153538171153541121153538173086.88+
chr121155898271155902701155898272936.56+
Download the Full Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab