DNA Damage Atlas


GSM1824962-ΔSα_1xI-5prime_clone-1_rep1




Basic Information

Manual

Sample ID:   

SRR2104686


Source Project ID:   

GSE71005

Cell Type:   

CH12F3 murine lymphoma cell


Organism:   

Mus musculus


Treatment:   

I-SceI plasmid nucleofection


Genotype:   

delta-S-alpha_1xI-SceI


Targeted break:   

delta-S-alpha_1xI-SceI


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113418603113422758113421007109922-
chr1211330467211331046011330639815677.2-
chr121133584501133621181133595505074.51-
chr121132714821132718651132716512733.68+
chr114031957403215840319572315.09+
chr59344802793448230934480272292.28+
chr178661464386614847866148472281.04-
chr11808805491808807551808805492258.9+
chr174716501547165239471650152077.38+
chr126228216762282551622823341817.71+
Download the Full Peak List



Motif Analysis

Manual





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