DNA Damage Atlas

GSM1824966-ΔSα_1xI-3prime_clone-2_rep1-re

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR2104690


Source Project ID:   

GSE71005

Cell Type:   

CH12F3 murine lymphoma cell


Organism:   

Mus musculus


Treatment:   

resequencing rep1


Genotype:   

delta-S-alpha_1xI-SceI


Targeted break:   

delta-S-alpha_1xI-SceI


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1211341852211342548011342119982340.6+
chr1211330522611331021411330850221303.8-
chr126228217362282553622823329637.05+
chr121132714771132718751132716916345.66-
chr121133583591133619881133595314993.38+
chr145478931654789520547893193095.06+
chr121132253581132260051132253582049.34+
chr121151540791151547401151544001910.42-
chr21797330971797334731797333001679.24-
chr121154567401154570051154569401667.83-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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