DNA Damage Atlas

GSM1825013-5primeSµ_ATM-KO_5prime_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR2104737


Source Project ID:   

GSE71005

Cell Type:   

Spleen B cell


Organism:   

Mus musculus


Treatment:   

cytokine stimulation


Genotype:   

ATM-/-


Targeted break:   

5'S-mu


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr124089370240893926408937214538.14+
chr128055343780553649805534471316.28+
chr121085491871085493901085491891080.07+
chr12425240842526234252423648.956+
chr12789412067894147778941206294.203+
chr12101802352101802558101802352290.275+
chr12113690121113690400113690121285.767+
chr12801101148011332680110530285.455+
chr12105524624105524945105524745248.377+
chr12115162675115163004115162675242.337+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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