DNA Damage Atlas

GSM1825031-5primeSµ_rif1-KO_5prime_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR2104755


Source Project ID:   

GSE71005

Cell Type:   

Spleen B cell


Organism:   

Mus musculus


Treatment:   

cytokine stimulation


Genotype:   

Rif1f/fCD19Cre


Targeted break:   

5'S-mu


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr120674153206743552067415411025.6+
chr121299403312994330129940583481.63+
chr194695774146957942469579412374.38-
chr72670728926707491267072902362.63+
chr148573313385733338857333331746.04-
chr124089354640893925408937031574.05+
chr136482758264827785648275851567.33+
chr121132241511132247511132244151458.27-
chr62419638724196588241965881187.19-
chr42126039921260601212604011181.31+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab