DNA Damage Atlas


GSM1834808-gH2AX_ChIP-seq_grow_4OHT




Basic Information

Manual

Sample ID:   

SRR2131846


Source Project ID:   

GSE71447

Cell Type:   

MCF-10A


Organism:   

Homo sapiens


Treatment:   

4-Hydroxytamoxifen


Treatment Time:   

2hrs


Targeted break:   

AsiSI


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM1834810-Input_DNA


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1110319092110319095/398.165/
chr2172173449172173452/309.684/
chr1041716594171662/294.937/
chr1224032649224032652/221.203/
chr223867092438670927/221.203/
chr1203831427203831430/176.962/
chr178047287780472880/176.962/
chr24335834043358343/176.962/
chr4186141699186141702/176.962/
chr12121765829121765832/162.215/
Download the Full Peak List




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