DNA Damage Atlas

GSM1847198-YPS128_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR2154268


Source Project ID:   

GSE71887

Organism:   

Saccharomyces cerevisiae


Strain:   

YPS128


Harvested Time:   

4 hr in meiosis


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

SPO11-oligo


Others:   

epitope tag: Spo11-Flag


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrVI9465096665959552423.63+
chrVII6088216109536103291491.29-
chrIV8347828368808359361358.9-
chrXVI4633174648554640631354.08-
chrVIII1214481233011221511301.68+
chrVII3972253989213983031248.79-
chrVII8479118495578488251122.27+
chrII6419626435386429031112.94+
chrIV5503985522295510691106.11-
chrII2575082588242581821081.95+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrVI9516996237959554277.57+
chrIII2114772120062117604006.03-
chrVIII1897761906291903463104.68+
chrIV8354648364818359362742.4-
chrII2578972584282581822604.16+
chrXVI4637244644554640632581.03-
chrXV9432619437829435652412.53+
chrII6423696431086429032304.65+
chrVIII4223034230414227492302.88+
chrVIII1219051229121221512302.49+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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