DNA Damage Atlas

GSM1847199-YPS128_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR2154269


Source Project ID:   

GSE71887

Organism:   

Saccharomyces cerevisiae


Strain:   

YPS128


Harvested Time:   

4 hr in meiosis


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

SPO11-oligo


Others:   

epitope tag: Spo11-Flag


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrVI9516996237959564062.4+
chrIII2114772120062117603802.31-
chrVIII1897761906291903462997.94+
chrIV1983201988071985832844.78+
chrIV8354648364818359362740.35-
chrII2578972584282581832546.28+
chrXV9432619437829435652392.09+
chrXVI4637244644554640632373.61-
chrVIII4223034230414227152294.94-
chrIV1476515147729414767712272.17-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrVI9516996237959564277.57+
chrIII2114772120062117604006.03-
chrVIII1897761906291903463104.68+
chrIV1983201988071985832791.12+
chrIV8354648364818359362742.4-
chrII2578972584282581832604.16+
chrXVI4637244644554640632581.03-
chrXV9432619437829435652412.53+
chrII6423696431086426922304.65+
chrVIII4223034230414227152302.88-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab