DNA Damage Atlas

GSM1847203-Spar_2

Basic Information Genome Browser Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR2154273


Source Project ID:   

GSE71887

Organism:   

Saccharomyces paradoxus


Strain:   

YPS138


Harvested Time:   

4 hr in meiosis


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

SPO11-oligo


Others:   

epitope tag: Spo11-Flag


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
CP020281.11182141202481191532421.78-
CP020282.18110008125608117381738.56-
CP020285.12680772700742692121724.98+
CP020277.16414665708647721525.28-
CP020284.12527652547902539571389.86+
CP020289.11821361841911835581347.28+
CP020287.13368493387243375881266.89-
CP020276.12047162093242066251264.47-
CP020288.17459337476847469411234.62-
CP020290.11420661444141437091216.23-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
CP020281.11182141202481191532223.91-
CP020283.11034701051861041801977.18-
CP020285.12682642699902692121639.14+
CP020282.18110008125418117381613.51-
CP020279.19042709057179049261493.86+
CP020282.15892285912795904811464.74+
CP020284.12528002545862539571400.26+
CP020281.14040142020410041297.74-
CP020290.11420661443951437091288.38-
CP020289.11822461841451835581276.14+
Download the Full Merged Peak List


Visualization

Manual





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