DNA Damage Atlas


GSM1865703-ChIP-seq-mES-γ-H2AX-12hrKD_ControlASOrep1




Basic Information

Manual

Sample ID:   

SRR2225949


Source Project ID:   

GSE69140

Cell Type:   

mESC


Organism:   

Mus musculus


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM1693780-ChIP-seq-mES-Input-12hrKD_ControlASOrep1


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA0267991339917.2864/
rDNA38800451994199914.593/
chr1323554800235575992355619910.2893/
chr39626840096270399962693999.24517/
chr173494820034952599349503995.67162/
chr132177820021783599217808995.65755/
chr21670630001670687991670658995.35584/
chr132375920023765399237622995.29181/
chr116260120062610399626057995.17047/
chr73217400322919932232994.97526/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA0267991339917.2864/
rDNA38800451994199914.593/
chr1323554800235569992355619912.8516/
chr39626840096270399962693999.24517/
chr73217400322739932232995.74768/
chr173494820034952599349503995.67162/
chr21670630001670685991670658995.52881/
Download the Full Merged Peak List



Motif Analysis

Manual





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