DNA Damage Atlas

GSM1865705-ChIP-seq-mES-γ-H2AX-12hrKD_7SKASOrep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR2225951


Source Project ID:   

GSE69140

Cell Type:   

mESC


Organism:   

Mus musculus


Genotype:   

7SK KD


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM1693782-ChIP-seq-mES-Input-12hrKD_7SKASOrep1


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA0267991339919.9519/
rDNA38800451994199916.9844/
chr732174003227599322249914.6304/
chrX76598600765991997659889910.5142/
chr102378060023788799237846999.6182/
chr158006920080084199800766999.48273/
chr132375680023766799237617999.43567/
chrY9073740090740599907389999.34575/
chr39626620096270399962682999.19769/
chr94079780040810399408040998.75859/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA0267991339919.9519/
rDNA38800451994199916.9844/
chr732174003227599322249914.6304/
chr1580072600800839998007669912.1766/
chr21670626001670705991670629999.93221/
chr102378060023788799237846999.6182/
chr132375680023766799237617999.43567/
chr97847220078485399784762999.36489/
chrY9073740090740599907389999.34575/
chr39626620096270399962682999.19769/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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