DNA Damage Atlas

GSM1865706-ChIP-seq-mES-γ-H2AX-12hrKD_7SKASOrep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR2225952


Source Project ID:   

GSE69140

Cell Type:   

mESC


Organism:   

Mus musculus


Genotype:   

7SK KD


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM1693783-ChIP-seq-mES-Input-12hrKD_7SKASOrep2


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA0267991339921.2555/
rDNA38800451994199918.6017/
chrY90737400907449999074119910.9024/
chr158007260080083999800782998.57641/
chr21670626001670705991670665997.49415/
chr97847220078485399784787996.97303/
chrY9079740090813999908056996.85718/
chr162310620023117399231117996.74081/
chr132375600023767199237615996.7357/
chr39626600096270399962681996.71594/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA0267991339921.2555/
rDNA38800451994199918.6017/
chr158007260080083999800782998.57641/
chr94079780040810199408013997.56839/
chr21670626001670705991670665997.49415/
chr132375680023766799237615997.45531/
chr102378060023788799237841997.43704/
chr39626620096270399962681997.00174/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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