DNA Damage Atlas


GSM1880631-DAB-BM-Myc-rep3




Basic Information

Manual

Sample ID:   

SRR2395794


Source Project ID:   

GSE73007

Cell Type:   

BM pro B cell


Organism:   

Mus musculus


Treatment:   

IL7 + SCF


Treatment Time:   

4days


Treatment Dose:   

IL-7: 2ng/mL + SCF: 2ng/mL


Genotype:   

ATM-/-, c-Myc-DJβ, Eμ-Bcl-2


Targeted break:   

c-Myc-DJβ


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1562730377627313816273058242241.4+
chr1561984428619867066198642733928.2-
chr1563716364637165776371636533825.6+
chr1562130550621309216213056033102.4+
chr1562328359623287306232836029571.5+
chr1562169437621703626216984027969.7+
chr1562413750624142736241395126299.6+
chr1562214896622155486221489923607.6+
chr1562176120621766776217645823224.4+
chr1563720057637203286372006222960.8+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr15627305786273098662730582126054+
chr1563648226636484276364822674021.4+
chr1562413951624141546241395170012.4+
chr1562130554621307746213056068136.8+
chr1562697817626980186269781965659.2+
chr1454122034541222395412223860756.2-
chr1561987151619879726198749657154.5+
chr1563738012637382166373801251850.2+
chr1562169437621700446216984047269.1+
chr1562139212621394136213921326298.2+
Download the Full Merged Peak List



Motif Analysis

Manual





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