DNA Damage Atlas

GSM1880648-DAB-vAbl-Cas9-rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR2395811


Source Project ID:   

GSE73007

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

4days


Treatment Dose:   

3uM


Genotype:   

ATM-/-, c-Myc-DJβ, Eμ-Bcl-2


Targeted break:   

Cas9 site downsream of c-Myc


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr670722355707241097072388579466.4-
chr641532989415340764153390031426.2-
chr668271062682712746827126619406.6-
chr1561985821619890906198678513653.4+
chr668121620681220316812182412133.6-
chr667610251676107596761050711043.8-
chr669110904691111106911090410893.7+
chr669016559690167676901656010789+
chr670751445707519927075178110712.3+
chr670116850701172667011706110189.6+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr670722355707240917072388570210.6-
chr641532989415340734153390048855.9-
chr670073800700742297007402518064+
chr1561985821619883546198678516927.8+
chr667610297676107156761050714457.8-
chr668271063682712746827126614227.5-
chr670116850701172667011706111516.7+
chr670751573707519907075178111480.5+
chr669110904691111106911090411405.4+
chr66812162068122031681218249766.88-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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