DNA Damage Atlas

GSM1887356-gH2AX_FC-FC_NGS-3406

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR2431803


Source Project ID:   

GSE73124

Cell Type:   

MEF


Organism:   

Mus musculus


Treatment:   

Tamoxifen


Treatment Time:   

24hrs


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

ChIP-seq (anti-γH2AX)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr211810180011813279911811729925.2091/
chrM10800161991349923.5868/
rDNA42000451994359921.941/
chrM06599329920.5537/
chr513705780013708559913707169915.1613/
chr1957926005806599579959914.2621/
chr514289320014291059914290189913.0005/
chr1861643000616679996165549912.9443/
chr1024585200246003992459279912.7597/
chr251121600511509995113629911.2092/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA42000451994359933.9718
chr211810460011813159911811729928.1244
chrM10800161991349920.3974
chrM06399329918.2917
rDNA0241991339916.0344
chr513705800013708339913707169914.9551
chr1957926005806599579959912.4422
chr1024585200246003992459279912.262
chr512538060012538619912538229911.8788
chr1861643000616669996165549911.6107
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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