DNA Damage Atlas

GSM1887358-gH2AX_F-F_NGS-3388

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR2431805


Source Project ID:   

GSE73124

Cell Type:   

MEF


Organism:   

Mus musculus


Treatment:   

NT


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

ChIP-seq (anti-γH2AX)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr211810880011813039911811959952.7952/
rDNA42000451994359944.0298/
chrM10800161991349932.4342/
chrM06599329926.5458/
chr513705860013708199913707029922.9014/
chr514289420014291019914290219918.9162/
chr1024585200246003992459279918.3673/
chr1934236000342571993424659917.0146/
rDNA0267991339916.8045/
chr1957928005804999579889916.5183/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA42200451994359949.6302
chr211810880011813039911811959927.0453
chrM10800161991349926.6509
chrM06399329922.3271
rDNA0267991339919.8728
chr513705940013707319913707029915.4851
chrX76598800765991997659889911.9974
chr51428942001429101991429021999.12924
chr102458520024600399245927999.0345
chr195792800580499957988998.99146
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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