DNA Damage Atlas

GSM1887359-gH2AX_F-F_NGS-3400

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR2431806


Source Project ID:   

GSE73124

Cell Type:   

MEF


Organism:   

Mus musculus


Treatment:   

NT


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

ChIP-seq (anti-γH2AX)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM10800161991349939.7532/
chrM06599329929.8898/
rDNA42200451994369924.247/
chr211810540011813039911811789918.6138/
chrX14348300014348319914348309912.8923/
chr647748400477485994774849912.6999/
chr930204003020599302049912.1226/
rDNA026799133999.72057/
chr51370594001370815991370704998.10554/
chr51253814001253863991253838996.89397/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA42200451994369949.6302
chr211810880011813039911811789927.0453
chrM10800161991349926.6509
chrX14348300014348319914348309925.4898
chrM06399329922.3271
rDNA0267991339919.8728
chr513705940013707319913707049915.4851
chrX76598800765991997659899911.9974
chr51428942001429101991429028999.12924
chr195792800580499957991998.99146
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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