DNA Damage Atlas

GSM1887360-gH2AX_F-F_NGS-6268

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR2431807


Source Project ID:   

GSE73124

Cell Type:   

MEF


Organism:   

Mus musculus


Treatment:   

NT


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

ChIP-seq (anti-γH2AX)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA41800451994349956.831/
rDNA0267991339926.4831/
chrM10800161991349917.2081/
chrX14348280014348319914348299915.6118/
chrM06399319915.5545/
chr211810560011813279911811919913.673/
chrX7659840076599199765987999.78663/
chr127480380074804599748041997.54732/
chr51370594001370731991370662996.63679/
rDNA3880040999398996.50918/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA42200451994349949.6302
chr211810880011813039911811919927.0453
chrM10800161991349926.6509
chrM06399319922.3271
rDNA0267991339919.8728
chr513705940013707319913706629915.4851
chr51428942001429101991428999999.12924
chr102458520024600399245925999.0345
chr64774840047748599477484998.88911
chr193423760034256799342471998.80727
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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