DNA Damage Atlas

GSM1917810-X4p53_Chr12_sgRNA_1_DMSO_ExpA

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR2820419


Source Project ID:   

GSE74356

Cell Type:   

NSPCs


Organism:   

Mus musculus


Strain:   

129SVE


Treatment:   

DMSO


Genotype:   

Xrcc4-/- p53-/-


Targeted break:   

Chr12_sgRNA_1


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1111791962111792165111791965897.974+
chr15998499769985019199849976847.855+
chr12783333278335337833533725.528-
chr19382666133826681438266613725.528+
chr5276053182760552027605318721.936+
chr5365276313652783336527631721.936+
chr11317401331742163174013718.38+
chr17637186596371886263718862718.38-
chr3882760098827621288276212718.38-
chr7481785548180584817855718.38+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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