DNA Damage Atlas

GSM1917851-X4p53_Chr16_sgRNA_2_APH_ExpB

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR2820475


Source Project ID:   

GSE74356

Cell Type:   

NSPCs


Organism:   

Mus musculus


Strain:   

129SVE


Treatment:   

Aphidicolin


Genotype:   

Xrcc4-/- p53-/-


Targeted break:   

Chr16_sgRNA_2


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr143468139334681596346813962093.77+
chr159491060294912140949109151796.31+
chr66061363660613842606138421031.64-
chrX161689293161689495161689295789.049+
chr2526691065266931452669106766.288+
chr2839376398393785383937839744.804-
chr10315712523157145331571452528.65-
chr10441721634417236444172163528.65+
chr11119710998119711199119711198528.65-
chr12797022317970243279702231528.65+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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