DNA Damage Atlas

GSM1954836-B6fXC3Hm_antiDMC1_SSDS

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR2961455 , SRR2961456


Source Project ID:   

GSE75419

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

maternal strain: C57BL/6J; paternal strain: C3H/HeJ


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX1351459613520915135167558.41753+
chr68778903787794272877914197.95395+
chr61405885261405946481405915547.70108-
chrX6586268659098165882677.65217+
chr51448374161448425011448395887.47538-
chr191020822610213192102109117.45165-
chrX1665346821665380771665364227.12148-
chr39813488998139538981374347.07855+
chr118960993989614067896118606.96325-
chrX5183709851840707518390776.88529-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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