DNA Damage Atlas


GSM1954839-B6fXCASTm_antiDMC1_SSDS




Basic Information

Manual

Sample ID:   

SRR2961459 , SRR2961460


Source Project ID:   

GSE75419

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

maternal strain: C57BL/6J; paternal strain: CAST/EiJ


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Others:   

control: GSM1954852-B6fXCASTm_Input_SSDS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr61405893531405935071405915546.73549-
chr71959869719602596196013126.21469-
chr53326520733270270332680805.54707-
chr101276021911276054141276034475.43798-
chr73052910530532975305310725.42915-
chr82238328322387111223852835.29565-
chr18621559286220011862180575.2803-
chr191066789210671966106699045.26096-
chrX1034935641034983871034935995.15542-
chr31076145711076186871076168115.09185+
Download the Full Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab