DNA Damage Atlas

GSM1985855-NHF1_CPD_48h_XR-seq_Rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3062621,SRR3062622,SRR3062623


Source Project ID:   

GSE76391

Cell Type:   

NHF1


Organism:   

Homo sapiens


Treatment:   

UV (254 nm)


Treatment Time:   

10s


Treatment Dose:   

1J/m2/s


Harvested Time:   

time after irradiation: 48h


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr19_gl000208_random116811795.80124/
chr9_gl000199_random4874849129489374.84146/
rDNA4001040448402074.66263/
chrUn_gl000226684742604.54334/
rDNA4198842396421864.3596/
rDNA2929324630864.15637/
rDNA1341814515143303.7233/
chrUn_gl0002243069435333943.69412/
chr9_gl000199_random9256193107927483.49904/
chr111362514136374613633973.42226/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr19_gl000208_random276811795.94316/
chr9_gl000199_random4874849129489374.84146/
chrUn_gl000226684732604.55456/
rDNA4198842396421864.3596/
rDNA2938324630864.27782/
rDNA1342114515143303.73351/
chrUn_gl0002243073435333943.70566/
chr111362514136364213633973.67938/
chr9_gl000199_random9256193107927483.49904/
chrUn_gl0002124066541111408533.39732/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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