DNA Damage Atlas


GSM2059292-HTGTS_DMSO_rep2




Basic Information

Manual

Sample ID:   

SRR3160330


Source Project ID:   

GSE77788

Cell Type:   

anti-CD40 and Il4 activated B cell


Organism:   

Mus musculus


Treatment:   

DMSO


Treatment Dose:   

1mM


Genotype:   

c-myc25xI-SceI WT


Harvested Time:   

4 days


Layout:   

SINGLE


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr159029917590299386902993866573.28-
chr121134233871134269381134233872922.14+
chr121132742851132770741132744851565.57-
chr151138420511384412113842081488.96+
chr121133332591133397521133333311455.71+
chr157637277276372978763729721246.82-
chr151033206621033208691033206691240.8+
chr111031014181031017121031014181223.07+
chr156201723662017931620174081182.6+
chr156202277162023413620231051120.2+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr158190473281904943819049312769.26-
chr156202302462023383620231051201.34+
chr1316106383161084431610838964.899-
chr14454769074547716345477082855.718-
chr2155805377155806049155805469654.387+
Download the Full Merged Peak List



Motif Analysis

Manual





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