DNA Damage Atlas


GSM2059294-HTGTS_AS-604850_rep1




Basic Information

Manual

Sample ID:   

SRR3160332


Source Project ID:   

GSE77788

Cell Type:   

anti-CD40 and Il4 activated B cell


Organism:   

Mus musculus


Treatment:   

AS-604850


Treatment Dose:   

1mM


Genotype:   

c-myc25xI-SceI WT


Harvested Time:   

4 days


Layout:   

SINGLE


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr159029917290299386902993865242.41-
chr121134233701134273101134233702536.78+
chr121132744961132773641132744962026.97+
chr121133344061133388181133344061895.53+
chr156197205661972724619723171374.1+
chr156200347362005523620038831169.14+
chr156219158862191894621915881166.54+
chr156201502962015740620155121147.55+
chr156197378361976101619738921143.96+
chr11358550761358553041358550761118.3+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr159029917590299386902993865628.26-
chr111031014241031016461031014241744.12+
chr144547691945477385454771191411.45-
chr21558054691558060221558056691301.16-
chr2150933338150933553150933520871.369-
chr3145759050145759260145759050861.181+
Download the Full Merged Peak List



Motif Analysis

Manual





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