DNA Damage Atlas

GSM2059308-HTGTS_KO-DMSO_rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3160346


Source Project ID:   

GSE77788

Cell Type:   

anti-CD40 and Il4 activated B cell


Organism:   

Mus musculus


Treatment:   

DMSO


Treatment Dose:   

1mM


Genotype:   

c-myc25xI-SceI AID-/-


Harvested Time:   

4 days


Layout:   

SINGLE


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr159029917590299386902993864266.55-
chr156197548661976126619755132637.43+
chr156197370961974721619739712168.32+
chr158190463581905203819049401882.11-
chr21558052441558060941558053171390.08+
chr156203344562034348620340971370.8+
chr144547689845477389454770981145.93-
chr1135855081135855317135855081953.646+
chr15620533936205416162053884952.404+
chr15620259346202644962025934874.021+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr159029917590299386902993863847.59-
chr156197389961974598619739713055.03+
chr158190470481904943819049402874.18-
chr21558052761558060681558053171104.05+
chr71055791371055793641055792781075.85-
chr11103101426103101697103101426965.5+
chr14454769214547736945477098942.573-
chr1135855081135855299135855081907.581+
chr1316106123161084531610718772.95-
chr3145759050145759260145759050475.941+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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