DNA Damage Atlas

GSM2059316-HTGTS_PI3K-WT_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3160354


Source Project ID:   

GSE77788

Cell Type:   

anti-CD40 and Il4 activated B cell


Organism:   

Mus musculus


Genotype:   

c-myc25xI-SceI WT


Harvested Time:   

4 days


Layout:   

SINGLE


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr15619877186199167561988120115298+
chr1590299175902993939029938613977.5-
chr121134253731134260821134253736641.95+
chr121133370191133373581133370194902.8+
chr51219161771219164001219161773726.57+
chr121132756311132762071132756313366.42+
chr156215914162159343621591412742.66+
chr111203536201203538241203538202715.77-
chr115436941543714554369412715.77+
chr156044578060445984604457802715.77+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1590299175902993869029938611518-
chr121134253731134260211134253734788.56+
chr121133370191133373581133370192479.1+
chr144547695545477371454770991292.01-
chr21509333381509335531509335381170.41-
chr65432919754329403543293971071.46-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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