DNA Damage Atlas


GSM2059317-HTGTS_PI3K-WT_rep3




Basic Information

Manual

Sample ID:   

SRR3160355


Source Project ID:   

GSE77788

Cell Type:   

anti-CD40 and Il4 activated B cell


Organism:   

Mus musculus


Genotype:   

c-myc25xI-SceI WT


Harvested Time:   

4 days


Layout:   

SINGLE


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1590299173902994049029938612056.2-
chr151005512181005514231005514236089.95-
chr121134239021134261341134239023700.23+
chr157457394874574158745741582743.82-
chr111031014181031017111031014182622.08+
chr157156105971561294715610592451.93+
chr156299348462993724629937232000.7-
chr121133345091133385731133345091795.91+
chr156165148861651779616516881650.07-
chr174777970547779997477797051644.41+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1590299175902993869029938611518-
chr144547695545477371454771191292.01-
chr21509333381509335531509335381170.41-
chr65432919754329403543293931071.46-
Download the Full Merged Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab