DNA Damage Atlas

GSM2059321-HTGTS_MEC1_DMSO_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3160359


Source Project ID:   

GSE77788

Cell Type:   

MEC1


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Dose:   

1mM


Layout:   

SINGLE


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr82920795129208445292082429745.05+
chr81444529671444532111444529747398.65+
chr82338703423387252233870346072.78+
chr67423057274231041742307725388.87-
chr187127717130447127713967.63+
chr156813229068132777681323823459.79+
chr74826035482638048262352790.76-
chr14390914943909370439093492722.88-
chrUn_gl0002201377401379581377402208.28+
chr81949529194975419497292139.58-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr82920795129208445292082429572.15+
chr81444529741444531791444529748500.87+
chr82338703423387238233870346496.33+
chr67423057274230954742307725416.62-
chr81949529194975419497294439.02-
chr187127717129847127712987.52+
chr117228511072285412722853101852.87-
chr74826035482636848262351795.65-
chr161881272318812945188127231453.45+
chr14390915343909358439093491342.86-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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