DNA Damage Atlas

GSM2059322-HTGTS_MEC1_DMSO_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3160360


Source Project ID:   

GSE77788

Cell Type:   

MEC1


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Dose:   

1mM


Layout:   

SINGLE


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr891643219167291916641410146-
chr82920795129208450292082369305.07+
chr89167565916921691677749240.66+
chr81444529741444531791444529748782.61+
chr81949528194975719497297034.57-
chr82338703423387238233870346503.12+
chr67423055974230954742307594078.27-
chr117228507172285412722850712500.99+
chr156813238568132779681323851924.06+
chr141063265011063268141063265011816.48+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr82920795129208445292082369572.15+
chr81444529741444531791444529748500.87+
chr82338703423387238233870346496.33+
chr67423057274230954742307595416.62-
chr81949529194975419497294439.02-
chr156813238568132777681323852962.56+
chr74826035482636848262191795.65-
chr161881272318812945188127231453.45+
chr14390915343909358439093531342.86-
chr141063265011063268141063265011292.75+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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