DNA Damage Atlas


GSM2059336-HTGTS_JeKo-1_DMSO_rep2




Basic Information

Manual

Sample ID:   

SRR3160374


Source Project ID:   

GSE77788

Cell Type:   

JeKo-1


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Dose:   

1mM


Layout:   

SINGLE


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr89166862916729491668675798.83+
chr81444529701444531811444529743166+
chr89165755916653091664092801.4-
chr82338702423387247233870342546.28+
chr82920792629208448292082422495.5+
chr81949513194973019497292154.92-
chr81287662971287672711287667271440.3-
chr67423072274231122742307221336.05+
chr156813222468132797681324041049.25+
chr7482601948263744826219846.792-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr82920823129208447292082424542.52+
chr81444529701444531771444529742195.89+
chr82338703423387235233870341898.24+
chr81287662971287671411287667271847.72-
chr67423072274231070742307221187.35+
chr15681322456813279468132404859.308+
chr5140090862140091069140090862562.001+
chrUn_gl000220119047119463119247345.417-
chr18458202924582051145820472314.774-
Download the Full Merged Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab