DNA Damage Atlas


GSM2059337-HTGTS_JeKo-1_DMSO_rep3




Basic Information

Manual

Sample ID:   

SRR3160375


Source Project ID:   

GSE77788

Cell Type:   

JeKo-1


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Dose:   

1mM


Layout:   

SINGLE


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr81287420151287431881287426143095.85-
chr82920795129208449292082361663.71+
chr81287636341287655021287638461575.98-
chr82338703423387246233870341413.59+
chr81287662871287672481287665441394.12-
chr81444529491444533081444529741374.91+
chr89164438916649891663331086.79-
chr8128735168128736093128735718914.765+
chr8916754491693679167720850.954+
chr8128719266128719813128719266805.681+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr82920823129208447292082364542.52+
chr81444529701444531771444529742195.89+
chr82338703423387235233870341898.24+
chr81287662971287671411287665441847.72-
chr67423072274231070742307771187.35-
chr15681322456813279468132399859.308+
chr5140098512140098727140098519462.334+
chr18458202924582051145820492314.774-
Download the Full Merged Peak List



Motif Analysis

Manual





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