DNA Damage Atlas

GSM2068755-NHEK_break_seq_rep1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3182242,SRR3182243,SRR3182244,SRR3182245


Source Project ID:   

GSE78172

Cell Type:   

NHEK


Organism:   

Homo sapiens


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.038818


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022012500512591512549314.7605+
rDNA37397393483794511.5665-
rDNA23812296808.99397-
rDNA5192836565067.03316+
chr71390435371390459201390451741.85197+
chr81288632881288656951288639261.80954-
chr71435335881435341651435338981.76635-
chr91393768821393802601393796101.7448+
chr163090676630909118309074111.73739+
chr12769127827694157276920661.69321-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA5192836565068.92138+
chr81288632881288656301288639261.95839-
chr154065960740661033406601351.8463-
chr88099606880998042809966571.82553-
chr12769145427694151276920661.81762-
chr171551640155397715523431.74871-
chr162822190128224060282234141.73127+
chr213625983636263016362604521.71947-
chr91367458131367478741367464251.70521-
chr19010839031749018641.69799-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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