DNA Damage Atlas

GSM2068756-NHEK_break_seq_rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3182246


Source Project ID:   

GSE78172

Cell Type:   

NHEK


Organism:   

Homo sapiens


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.009976


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA51091205771917.4384-
chrY1800864118008888180087055.53252-
chr41765579421765589681765587694.31969-
chrY1799457517995099179948513.59465+
chr6_mann_hap41218104121888212186153.05404+
chr165766198057663175576625672.93612+
chr9_gl000199_random1360381398521381362.91477-
chr11610845611610859871610852592.85763+
chr174057976740581146405804502.84789+
chr101211020612111594121108622.82943-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA5192836571918.92138-
chr81288632881288656301288645801.95839+
chr154065960740661033406603821.8463+
chr88099606880998042809965871.82553-
chr12769145427694151276935191.81762+
chr171551640155397715525041.74871+
chr162822190128224060282225991.73127-
chr213625983636263016362604721.71947+
chr91367458131367478741367472751.70521+
chr19010839031749023411.69799+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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