DNA Damage Atlas

GSM2068757-NHEK_bless_seq_rep1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3182247, SRR3182248, SRR3182249, SRR3182250, SRR3182251


Source Project ID:   

GSE78172

Cell Type:   

NHEK


Organism:   

Homo sapiens


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

BLESS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.921789


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random118094118511118396223.683-
chr9_gl000199_random11342711418011397584.7314-
chr9_gl000199_random13913413965113937527.5323+
chr9_gl000199_random15545715600715566126.7938-
chrUn_gl00021464006660046506921.6241+
chr9_gl000199_random13347413400213370920.9327-
chr9_gl000199_random11016511065111032819.6405+
chr9_gl000199_random16304816375816351518.8689+
chr1146421384642487464224218.7134+
chr645146559451469974514662118.3519+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random118116118497118396156.703-
chr9_gl000199_random11360611411311397574.175-
chr9_gl000199_random13926213964213937534.2301+
chr315463160915463193115463163529.5591+
chr645146559451468854514662122.7396+
chr1146421384642487464224219.5113+
chr9_gl000199_random11030211056611032818.8084+
chrUn_gl00021464865655066506917.5888+
chrX34267168342674493426723816.7697+
chr9_gl000199_random15546015600715566115.7878-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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